Journal Articles

54 publications in 2022

A Large Video Set of Natural Human Actions for Visual and Cognitive Neuroscience Studies and Its Validation with fMRI (opens in a new tab)Burcu Aysen Urgen, Hilal Nizamoğlu, Aslı Eroğlu, Guy A. OrbanBrain Sciences, 2022Assessment of glymphatic function in narcolepsy using DTI-ALPS index (opens in a new tab)Ekim Gümeler, Elif Aygun, F. İrsel Tezer, Emine Ülkü Sarıtaş, Kader Karlı OğuzSleep Medicine, 2022Estimating receptive field profiles of specific visual fields (opens in a new tab)O. Batuhan Erkat, Dilara Erişen, Cemre Yılmaz, Funda Yildirim, Hüseyin BoyacıJournal of Vision, 2022Neural underpinnings of biological motion perception under attentional load (opens in a new tab)Hilal Nizamoğlu, Burcu Aysen UrgenJournal of Vision, 2022Color constancy as a function of similarity in material appearance (opens in a new tab)Robert Ennis, Karl R. Gegenfurtner, Katja DoerschnerJournal of Vision, 2022The effect of prior knowledge on biological motion perception (opens in a new tab)Hüseyin O. Elmas, Berfin Aydın, Sena Er, Ada Dilek Rezaki, Ayşesu İzgi, Buse Merve Ürgen, Hüseyin Boyacı, Burcu Aysen UrgenJournal of Vision, 2022SEGMENTATION OF SPINAL SUBARACHNOID LUMEN WITH 3D ATTENTION U-NET (opens in a new tab)Ayşe Keleş, Oktay Algın, Pınar Özışık, Baha Şen, Fatih V. ÇelebiJournal of Mechanics in Medicine and Biology, 2022A comparison of equivalent noise methods in investigating local and global form and motion integration (opens in a new tab)Andrea Pavan, Adriano Contillo, Seyma Koc Yilmaz, Hulusi Kafalıgönül, Rita Donato, Louise O’HareAttention Perception & Psychophysics, 2022Federated Learning of Generative Image Priors for MRI Reconstruction (opens in a new tab)Gokberk Elmas, Salman Ul Hassan Dar, Yılmaz Korkmaz, Emir Ceyani, Burak Susam, Muzaffer Özbey, Salman Avestimehr, Tolga ÇukurIEEE Transactions on Medical Imaging, 2022Relationship between the beam propagation method and linear canonical and fractional Fourier transforms (opens in a new tab)Aykut Koç, Haldun M. ÖzaktaşApplied Optics, 2022Caloric restriction reinforces the stem cell pool in the aged brain without affecting overall proliferation status (opens in a new tab)Begün Erbaba, Duygu Macaroglu, Narin Ilgim Ardic-Avci, Ayça Arslan-Ergül, Michelle M. AdamsGene, 2022Pathways linking school bullying and psychotic experiences: Multiple mediation analysis in Chinese adolescents and young adults (opens in a new tab)Lu Hua Chen, Timothea ToulopoulouFrontiers in Psychiatry, 2022Cerebrovascular modelling for the management of aneurysm embolization using an intrasaccular flow diverter made by 3D printing (opens in a new tab)Oktay Algın, Ayşe Keleş, Çağdaş OtoPolish Journal of Radiology, 2022The effect of gender bias on hate speech detection (opens in a new tab)Furkan Şahi̇nuç, Eyüp Halit Yılmaz, Çağrı Toraman, Aykut KoçSignal Image and Video Processing, 2022Effects of psychosis-associated genetic markers on brain volumetry: a systematic review of replicated findings and an independent validation (opens in a new tab)Nuno Vouga Ribeiro, Vânia Tavares, Elvira Bramon, Timothea Toulopoulou, Isabel Valli, Sukhwinder Singh Shergill, Robin M. Murray, Diana Pinto PrataPsychological Medicine, 2022Hand explorations are determined by the characteristics of the perceptual space of real-world materials from silk to sand (opens in a new tab)Dicle N. Dövencioğlu, F. Seyhun Üstün, Katja Doerschner, Knut DrewingScientific Reports, 2022Sheared two‐dimensional radiofrequency excitation for off‐resonance robustness and fat suppression in reduced field‐of‐view imaging (opens in a new tab)Bahadır Alp Barlas, Cagla Deniz Bahadir, Sevgi Gökçe Kafalı, Ugur Yilmaz, Emine Ülkü SarıtaşMagnetic Resonance in Medicine, 2022TERT distal promoter GC islands are critical for telomerase and together with DNMT3B silencing may serve as a senescence-inducing agent in gliomas (opens in a new tab)Naz Şerifoğlu, Begün Erbaba, Michelle M. Adams, Ayça Arslan-ErgülJournal of Neurogenetics, 2022Attentional modulations of audiovisual interactions in apparent motion: Temporal ventriloquism effects on perceived visual speed (opens in a new tab)Aysun Duyar, Andrea Pavan, Hulusi KafalıgönülAttention Perception & Psychophysics, 2022Semi-Supervised Learning of MRI Synthesis Without Fully-Sampled Ground Truths (opens in a new tab)Mahmut Yurt, Onat Dalmaz, Salman Ul Hassan Dar, Muzaffer Özbey, Berk Tınaz, Kader Karlı Oğuz, Tolga ÇukurIEEE Transactions on Medical Imaging, 2022Rapid TAURUS for Relaxation-Based Color Magnetic Particle Imaging (opens in a new tab)Musa Tunç Arslan, Ali Alper Özaslan, Semih Kurt, Yavuz Muslu, Emine Ülkü SarıtaşIEEE Transactions on Medical Imaging, 2022A z‐gradient array coil with a dedicated active‐shielded array coil for MRI (opens in a new tab)Manouchehr Takrimi, Ergin AtalarMagnetic Resonance in Medicine, 2022Task-Dependent Warping of Semantic Representations during Search for Visual Action Categories (opens in a new tab)Mo Shahdloo, Emin Çelik, Burcu Aysen Urgen, Jack L. Gallant, Tolga ÇukurJournal of Neuroscience, 2022An Exploratory Analysis of the Neural Correlates of Human-Robot Interactions With Functional Near Infrared Spectroscopy (opens in a new tab)Emre Yorgancıgil, Funda Yildirim, Burcu Aysen Urgen, Sinem Burcu ErdoğanFrontiers in Human Neuroscience, 2022TranSMS: Transformers for Super-Resolution Calibration in Magnetic Particle Imaging (opens in a new tab)Alper Güngör, Baris Askin, Damla Alptekin Soydan, Emine Ülkü Sarıtaş, Can Barış Top, Tolga ÇukurIEEE Transactions on Medical Imaging, 2022Named-entity recognition in Turkish legal texts (opens in a new tab)Can Çetindağ, Berkay Yazıcıoğlu, Aykut KoçNatural Language Engineering, 2022Visual perception of the built environment in virtual reality: A systematic characterization of human aesthetic experience in spaces with curved boundaries. (opens in a new tab)Tuğçe Elver Boz, Halime Demirkan, Burcu Aysen UrgenPsychology of Aesthetics Creativity and the Arts, 2022A workflow for predicting temperature increase at the electrical contacts of deep brain stimulation electrodes undergoing MRI (opens in a new tab)Alireza Sadeghi‐Tarakameh, Nur Izzati Huda Zulkarnain, Xiaoxuan He, Ergin Atalar, Noam Harel, Yiğitcan EryamanMagnetic Resonance in Medicine, 2022Engineered Bacteria with Genetic Circuits Accumulating Nanomagnets as MRI Contrast Agents (Small 26/2022) (opens in a new tab)Merve Yavuz, Mustafa Ütkür, Ebru Şahin Kehribar, Ecrin Yağız, Emine Ülkü Sarıtaş, Urartu Özgür Şafak ŞekerSmall, 2022Deep Clustering via Center-Oriented Margin Free-Triplet Loss for Skin Lesion Detection in Highly Imbalanced Datasets (opens in a new tab)Şaban Öztürk, Tolga ÇukurIEEE Journal of Biomedical and Health Informatics, 2022The Effects of Respiratory Muscle Training on Resting‐State Brain Activity and Thoracic Mobility in Healthy Subjects: A Randomized Controlled Trial (opens in a new tab)Naciye Vardar‐Yağlı, Melda Sağlam, Hacer Dasgin, Kader Karlı OğuzJournal of Magnetic Resonance Imaging, 2022Motion processing impaired by transient spatial attention: Potential implications for the magnocellular pathway (opens in a new tab)Andrea Pavan, Seyma Koc Yilmaz, Hulusi Kafalıgönül, Luca Battaglini, Steven P. BlurtonVision Research, 2022Increasing the spatial extent of attention strengthens surround suppression (opens in a new tab)Merve Kınıklıoğlu, Hüseyin BoyacıVision Research, 2022Comparison of Visual Rating Scale Based on Brain 18F-FDG-PET and Montreal Cognitive Assessment Test in Probable Alzheimer’s Disease (opens in a new tab)Elifcan Aladağ, Elif Bulut, Pınar Demirayak, Bilge Volkan Salancı, Kader Karlı Oğuz, Belkıs Erbaş, Eser Lay Ergün, Burcu Balam Doğu, Mustafa Cankurtaran, Meltem Gulhan HalilActa Medica, 2022Bimodal Interventional Instrument Markers for Magnetic Particle Imaging and Magnetic Resonance Imaging—A Proof-of-Concept Study (opens in a new tab)Franz Wegner, Kerstin Lüdtke‐Buzug, Sjef Cremers, Thomas Friedrich, Malte Maria Sieren, Julian Haegele, Martin Koch, Emine Ülkü Sarıtaş, Paul J. A. Borm, Thorsten M. Buzug, et al.Nanomaterials, 2022Connections of the Dentate Nucleus with the Amygdala: Experimental Rat and Human 3-Tesla Tractography Study (opens in a new tab)Safiye Çavdar, Yasin Celal Güneş, Oktay AlgınBrain Connectivity, 2022Engineered Bacteria with Genetic Circuits Accumulating Nanomagnets as MRI Contrast Agents (opens in a new tab)Merve Yavuz, Mustafa Ütkür, Ebru Şahin Kehribar, Ecrin Yağız, Emine Ülkü Sarıtaş, Urartu Özgür Şafak ŞekerSmall, 2022ResViT: Residual Vision Transformers for Multimodal Medical Image Synthesis (opens in a new tab)Onat Dalmaz, Mahmut Yurt, Tolga ÇukurIEEE Transactions on Medical Imaging, 2022Gender bias in legal corpora and debiasing it (opens in a new tab)Nurullah Sevim, Furkan Şahi̇nuç, Aykut KoçNatural Language Engineering, 2022Nonlinear droop compensation for current waveforms in MRI gradient systems (opens in a new tab)Reza Babaloo, Ergin AtalarMagnetic Resonance in Medicine, 2022Progressively volumetrized deep generative models for data-efficient contextual learning of MR image recovery (opens in a new tab)Mahmut Yurt, Muzaffer Özbey, Salman Ul Hassan Dar, Berk Tınaz, Kader Karlı Oğuz, Tolga ÇukurMedical Image Analysis, 2022Learning interpretable word embeddings via bidirectional alignment of dimensions with semantic concepts (opens in a new tab)Lütfi Kerem Şenel, Furkan Şahi̇nuç, Veysel Yücesoy, Hinrich Schütze, Tolga Çukur, Aykut KoçInformation Processing & Management, 2022Behavioral and ERP evidence that object-based attention utilizes fine-grained spatial mechanisms (opens in a new tab)Esra Nur Çatak, Mert Özkan, Hulusi Kafalıgönül, Gene R. StonerCortex, 2022Feasibility of freehand CT and 3-T MR guided brain aspiration biopsies with 18/20-gauge coaxial needles (opens in a new tab)Oktay Algın, Gıyas AyberkJapanese Journal of Radiology, 2022Automated Parameter Selection for Accelerated MRI Reconstruction via Low-Rank Modeling of Local k-Space Neighborhoods (opens in a new tab)Efe Ilıcak, Emine Ülkü Sarıtaş, Tolga ÇukurZeitschrift für Medizinische Physik, 2022Simultaneous temperature and viscosity estimation capability via magnetic nanoparticle relaxation (opens in a new tab)Mustafa Ütkür, Emine Ülkü SarıtaşMedical Physics, 2022Predicting personality traits with semantic structures and LSTM-based neural networks (opens in a new tab)Muhammed Ali Koşan, Hacer Karacan, Burcu Aysen UrgenAlexandria Engineering Journal, 2022Long-term efficacy and safety of WovenEndoBridge (WEB)-assisted cerebral aneurysm embolization (opens in a new tab)Oktay Algın, Seniha Corabay, Gıyas AyberkInterventional Neuroradiology, 2022Unsupervised MRI Reconstruction via Zero-Shot Learned Adversarial Transformers (opens in a new tab)Yılmaz Korkmaz, Salman Ul Hassan Dar, Mahmut Yurt, Muzaffer Özbey, Tolga ÇukurIEEE Transactions on Medical Imaging, 2022Correlates of psychotic like experiences (PLEs) during Pandemic: An online study investigating a possible link between the SARS-CoV-2 infection and PLEs among adolescents (opens in a new tab)Helin Yılmaz Kafalı, Serkan Turan, Serap Akpınar, Müge Mutlu, Aslınur Özkaya Parlakay, Esra Çöp, Timothea ToulopoulouSchizophrenia Research, 2022Feasibility of 3D T1W sequences in contrast-material enhanced MR cisternography at 3T (opens in a new tab)Oktay Algın, Ural Koç, Gıyas AyberkTURKISH JOURNAL OF MEDICAL SCIENCES, 2022Fractional Fourier Transform Meets Transformer Encoder (opens in a new tab)Furkan Şahi̇nuç, Aykut KoçIEEE Signal Processing Letters, 2022Fractional Fourier Transform in Time Series Prediction (opens in a new tab)Emirhan Koç, Aykut KoçIEEE Signal Processing Letters, 2022Multivariate Time Series Imputation With Transformers (opens in a new tab)A. Yarkın Yldz, Emirhan Koç, Aykut KoçIEEE Signal Processing Letters, 2022